You should make separate entries for expenses, not deduct them from your director's salary. This applies if you are paying the actual expense either from your personal bank/credit card or your business bank/credit card. If the expense has been paid for from your business accounts then you will have entered these either in the current or credit card sheets as they occur, with a corresponding entry in "purchases" coded to travel, hotel and the like. If you have paid for them from your personal accounts, bank or credit, then you need to enter the amounts as "purchases" as above, and then make a transfer for the amount on a monthly or as required basis from business current a/c to your personal bank a/c i.e. reclaiming your expenses from the company. The actual expenses spreadsheet is not linked to the DIY-Package "financial" summary as far as I am aware, but is just a tool for you to record and summarise data as it occurs to facilitate the entries required above.
Depending on the nature of your business, you need to at least make entries in: sales, purchases, current a/c, saving a/c (if used), cash a/c (if used), credit card (if used), the wages interface to record your salary, PAYE, NIC, and the Company Secretary (to record dividends). The FinancialAccounts update directly from these inputs to generate the P&L, CT600 etc.
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